Carboxylic acid ester prodrug inhibitors of MEK

ABSTRACT

The invention generally relates to compounds having structure I: 
     
       
         
         
             
             
         
       
         
         
           
             wherein x represents alkyl, aryl or het-aryl, each of y independently represents hydrogen or halogen and z represents hydrogen or alkyl. Further, said compounds are inhibitors of MEK 1, 2 and 5. Furthermore, the invention includes methods of making said compounds, compositions including said compounds and uses for inhibiting MEK 1, 2 and 5.

This application claims priority under 35 U.S.C. §119(e) from U.S.provisional patent application No. 61/726,914, entitled “Carboxylic AcidEster Prodrug Inhibitors of MEK for Macular Degeneration” and filed onNov. 15, 2012, the contents of which are incorporated herein byreference.

FIELD OF THE INVENTION

The invention generally relates to novel compounds and, in particular,compounds of inhibitors of MAPK kinases 1, 2 and 5 (MEK 1, 2 and 5),methods of making said compounds, and their use in inhibiting MEK 1, 2and 5 activity.

BACKGROUND OF THE INVENTION

There are known in the art various MEK1/2 inhibitors, such as but notlimited to diphenyl anilines. In some instances, these compounds werediscovered for use in developing new anticancer agents.

The Mitogen-Activated Protein-Kinase (MAPK) signaling cascade is acomplex web of kinases that connects external and internal stimuli toeffect modification of cell energy levels and movement involving thecytoskeleton. Consequently the MAPK signaling cascade was previouslyknown as the microtubule-associated protein kinase signaling cascade.

Since the majority of prior art addresses the development of MEK1/2inhibitors, there is a need in the art to develop compounds that addressMEK5 inhibition and, compounds that address MEK1/2 inhibition and MEK5inhibition are particularly advantageous.

SUMMARY OF THE INVENTION

In one aspect, the invention provides a compound of structure I:

-   -   wherein, X represents alkyl, aryl or hetaryl, each of Y        independently represents hydrogen or halogen, and Z represents        hydrogen or alkyl.

The compound of structure I can be an inhibitor of MEK1, 2 and 5.

In certain embodiments, the invention provides a composition thatincludes a therapeutically effective amount of the compound havingstructure I.

In another aspect, the invention provides one of the following methodsof preparing the compound of structure I:

DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS

The invention relates to compounds having the following structure I:

wherein, X represents alkyl, aryl or hetaryl, each of Y independentlyrepresents hydrogen or halogen and Z represents hydrogen or alkyl.

In certain embodiments, alkyl can include but is not limited to methyl,ethyl, propyl, and butyl. Further, in certain embodiments, halogen caninclude but is not limited to fluorine, chlorine, bromine and iodine.

The compounds of the invention are inhibitors of mitogen-activatedprotein kinase (MAPK) 1, 2 and 5 (MEK 1, 2 and 5) Further, the inventionincludes methods of making said compounds, and their use in inhibitingMEK 1, 2 and 5 activity.

Furthermore, the invention includes compositions that include atherapeutically effective amount of the compound having structure I toadminister to a patient. As used herein, the term “therapeuticallyeffective amount” means an amount or dosage such that, when administeredin a physiologically tolerable composition, is sufficient to achieve aneffective systemic concentration or local concentration in tissue toelicit a response in the tissue, system or individual to which it wasadministered. The term “administering” and the like means to administera compound or composition systemically or locally, as directly into oronto a target tissue, to a patient whereby the compound or compositionpositively impacts the tissue to which it is targeted. The compound orcomposition may be administered by injection, topical administration andoral administration or by other methods alone or in combination withother known techniques. The term “inhibit” or the like includes theadministration of a compound or composition to at least partiallyprevent symptoms, a disease, condition or disorder.

Without intending to be bound by any theory, it is believed that acarboxylate can make an ionic interaction with an arginine in theproximity of the proposed allosteric binding site. A similar arginineresidue exists in MEK1/2 although at a slightly different location.Further, it is believed that a carboxylic ester delivers a carboxylicacid across a cellular membrane as a prodrug to deliver a metabolicallyreleased active MEK inhibitor. The carboxylic acid released is similarto carboxylic acid NSAIDS.

In certain embodiments, the compounds of the invention can be made inaccordance with the following preparation schematic A:

In certain other embodiments, the compounds of the invention can be madein accordance with the following preparation schematic B:

EXAMPLES Chemical Synthesis/Biological Testing of Carboxylic Acid-BasedInhibitors of MEK 5

TABLE I cellular cellular pERK1/2 pERK5 registration decrease decreaseStructure ID (%) (%)

U0126 99.72  0.28

SC-1-148 (SC-1-180) 98.5  20.1 

SC-1-72 Ester 98.5  20.1 

staurosporine 98.93 13 

SC-1-175 64.4  2.1

The above compounds identified in Table I were tested in a cellularassay and demonstrated the activity listed for cellular MEK1/2, MEK5phsophorylation of their related ERK following induction by EFG anddetermined by western blot analysis. Compounds staurosporine and U0126are included as standards.

Experimental: Chemical Synthesis

The chemical synthesis of the following compounds followed traditionalnucleophilc displacements of a halogen by attack of an analide to givethe desired compounds. In some instances, it was necessary to use anUlmann coupling strategy.

3,4-difluoro-2-((2-fluoro-4-iodophenyl)amino)benzoic acid (SC-1-148Acid)

A 250 mL round bottom flask was charged with 2-fluoro-4-iodoaniline,(73; 2.38 g, 10.05 mmol), 2,3,4-trifluorobenzoic acid, (74; 1.8 g,10.225 mmol), and 30 mL of anhydrous THF. The reaction mixture wascooled with an ice-bath to 0° C. and LiNH₂ (561.2 mg, 24.45 mmol) wasadded in portions 3 portions over 10 min. The reaction was then warmedto 58° C. and stirred for 12 h. 1 N HCl was then added to the reactionmixture at 0° C. to obtain a final pH of 1.0 (red to pHydrion paper).The reaction mixture was extracted three times with 10 mL portions ofEt₂O, washed three times with 5 mL portions of 1 N HCl, washed with NaCl(aq, sat) and dried over Na₂SO₄. The extract was decanted and thesolvent was removed under reduced pressure. The crude product wasisolated on SiO₂ using hexane/EA and provided 2.11 g (53%) of a whitesolid. mp: 199.0-200.1° C. (lit: 200-201° C.). SiO₂ TLC R_(f) 0.51 (2:1hexane/EA). ¹H NMR (MeOD-d₄): δ 7.86 (m, 1H), 7.46 (d, J=1.6 Hz, 1H),7.38 (d, J=1.6 Hz, 1H), 7.18 (m, 1H, OH), 6.86 (m, 1H), 6.72 (m, 1H),2.31 (m, 1H, NH). Anal Calcd for C₁₃H₇F₃INO₂: C, 39.72; H, 1.79; N,3.56. Found: C, 39.41; H, 1.91; N, 3.52.

SC-1-14 Acid (Ullmann Coupling)

A microwave reactor tube was charged with ortho-iodo benzoic acid (496mg, 2 mmol), 2-fluoro-4-iodo aniline (237 mg, 1 mmol), K₂CO₃ (416 mg, 3mmol), CuI (200 mg, 1.04 mmol) and 5 mL DMF/H₂O (9:1). The reaction wassubjected to 300 Watt microwave irradiation with the internaltemperature maintained at 100° C. for 2 h. After completion of thereaction was observed by TLC, 1 N HCl (˜4 mL) was added to the reactionmixture to obtain a final pH of 6.0. The solvent was then removed underreduced pressure. The crude compound was isolated on SiO₂ usinghexane/EA to give 217 mg (61%) of white solid; mp: 176.6-177.0° C.

SC-1-24 Amide

A dry 100 mL round bottom flask was charged with SC-1-14, (140 mg, 0.39mmol) and 5 mL of DCM. The reaction mixture was cooled on ice-bath to 0°C. 100 μL of anhydrous DMF was added followed by dropwise addition ofoxalyl chloride (70 μL, 0.8 mmol) over 2 min at 0° C. The reaction wasstirred at 23° C. for 2 h. The solvent was then removed under reducedpressure. The crude product was dissolved in 5 mL of DCM and theappropriate amine (0.5 mL, 11.5 mmol) was added neat at 23° C. Thereaction was stirred at 23° C. for 2 h; completion of reaction wasdetermined by TLC. A mixture of 10 mL of DCM and 5 mL of 5% Na₂CO₃ wasadded and the resultant mixture was extracted with DCM, washed with NaCl(aq, sat), and dried over Na₂SO₄. The extract was decanted and then thesolvent was removed under reduced pressure and water chased withtoluene. The crude product was isolated on SiO₂ using EA/0.5% TEA/10%ethanol and recrystallised from HCl salt (ethereal HCl) to give 20 mg(12%) of off-white powder. mp: 217.2-217.5° C.

SC-1-39 Acid

A microwave reactor tube was charged with ortho-iodo benzoic acid (496mg, 2 mmol), aniline (0.45 mL, 4 mmol), K₂CO₃ (832 mg, 6 mmol), CuI (400mg, 2.08 mmol) and 10 mL DMF/H₂O (9:1). The reaction was subjected to300 Watt microwave irradiation with the internal temperature maintainedat 100° C. for 1 h. After completion of the reaction was observed byTLC, 1 N HCl (˜9 mL) was added to the reaction mixture to obtain a finalpH of 6.0. The solvent was then removed under reduced pressure and waterchased with toluene. The crude compound was isolated on SiO₂ usinghexane/EA and recrystallised from toluene to give 267 mg (63%) of whitesolid; mp: 176.6-177.0° C.

SC-1-175 Acid

A 250 mL round bottom flask was charged with aniline (0.57 mL, 5.7mmol), 2,3,4-trifluorobenzoic acid, (1 g, 5.7 mmol), and 15 mL ofanhydrous THF. The reaction mixture was cooled with an ice-bath to 0° C.and LiNH₂ (327 mg, 14.25 mmol) was added in portions 2 portions over 10min. The reaction was then warmed to 58° C. (external temperature) andstirred for 7 h. 1 N HCl was then added to the reaction mixture at 0° C.to obtain a final pH of 1.0 (red to pHydrion paper). The reactionmixture was extracted three times with 5 mL portions of Et₂O, washedthree times with 5 mL portions of 1 N HCl, washed with NaCl (aq, sat)and dried over Na₂SO₄. The extract was decanted and the solvent wasremoved under reduced pressure. The crude product was isolated on SiO₂using hexane/EA and provided 606 mg (44%) yellow crystals. mp:162.1-162.6° C. SiO₂ TLC R_(f) 0.61 (2:1 hexane/EA).

Experimental: Biological Testing Western Blot Analysis of PotentialMEK-5 Inhibitors

The MDA-MB-231 triple negative breast cancer cell line was pretreatedwith compounds (10 μM) for 30 min followed by stimulation with epidermalgrowth factor (EGF, 50 ng/mL) for 15 min. Vehicle-treated cells werepretreated with DMSO for 30 min prior to EGF stimulation for 15 min.Protein visualization and quantification analysis was performed usingLI-COR Odyssey Imager.

* P<0.05 vs. Vehicle, one-way ANOVA followed by Tukey-Kramer test (n=3)

While the invention has been illustrated by the description ofembodiments thereof, and while the embodiments have been described inconsiderable detail, it is not intended to restrict or in any way limitthe scope of the appended claims to such detail. Additional advantagesand modifications will be readily apparent to those skilled in the art.The invention in its broader aspects is therefore not limited to thespecific details, representative system and method, and illustrateexamples shown and described. Accordingly, departures may be made fromsuch details without departing from the scope or spirit of theinvention.

The invention claimed is:
 1. An inhibitor of mitogen-activated proteinkinase 1, 2 and 5, having a general structure II:

wherein X is alkyl, aryl or het-aryl, each of Y¹ and Y² is independentlyhydrogen, each of Y³ and Y⁴ is independently fluorine, and Z is hydrogenor alkyl.
 2. A composition that includes a therapeutically effectiveamount of the compound of the structure II of claim
 1. 3. An inhibitorof mitogen-activated protein kinase 1, 2 and 5, having a generalstructure II:

wherein X is methyl, each of Y¹ and Y² is independently hydrogen, eachof Y³ and Y⁴ is independently fluorine, and Z is hydrogen.
 4. Aninhibitor of mitogen-activated protein kinase 1, 2 and 5, having ageneral structure II:

wherein X is methyl or hydrogen, each of Y¹ and Y² is independentlyhydrogen, each of Y³ and Y⁴ is independently fluorine, and Z ishydrogen.